YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124375786, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFKNVLYF QAGLGVLANM VLLLFYIFII LGHRPKPTDL ISCQLTFVHI IMVLTGGDIL  60
   61 LTDLFELLNI ENDLKCKTIF YISRVMRGLS ICTTCLLSVF QAVTISPSTS FLAKFKQKLK 120
  121 KYMVCVFLCI WSFNLAFSTN RIFYVGGFTN VSETNQMQVT KSCSLLPMNI IIRGLIFTIS 180
  181 TSRDVFLVGV MLTTSVYMVI TMFRYHRQCK YLYSISHLRE SPEKRATQTI LLLVSFFVVM 240
  241 YWVDFIISFT SDMIWMYDPL ILTVQKFMMN AYPTITPLVQ ISSDNRIIIM LKNLQSKHQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.81
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.74
Transmembrane Helix	40	62	0.82
Non-Cytoplasmic	63	87	0.79
Transmembrane Helix	88	111	0.78
Cytoplasmic	112	121	0.81
Transmembrane Helix	122	143	0.87
Non-Cytoplasmic	144	184	0.89
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	225	0.94
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	299	0.62