YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCJ14_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLARALRRL SGALEPGNSR AGDEEEAGAG LCRNGWAPGP VAGSRRRGRF VKKDGHCNVR  60
   61 FVNLGGQGAR YLSDLFTTCV DVRWRWMCLL FSCSFLASWL LFGLTFWLIA SLHGDLAAPP 120
  121 PPAPCFSQVA SFLAAFLFAL ETQTSIGYGV RSVTEECPAA VAAVVLQCIA GCVLDAFVVG 180
  181 AVMAKMAKPK KRNETLVFSE NAVVALRDHR LCLMWRVGNL RRSHLVEAHV RAQLLQPRVT 240
  241 PEGEYIPLDH QDVDVGFDGG TDRIFLVSPI TIVHEIDSAS PLYELGRAEL ARADFELVVI 300
  301 LEGMVEATAM TTQCRSSYLP GELLWGHRFE PVLFQRGSQY EVDYRHFHRT YEVPGTPVCS 360
  361 AKELDERAEQ ASHSPKSSFP GSLTAFCYEN ELALSCCQEE DEEEDTKEGT SAETPERAAS 420
  421 PQALTPTLAL TLPP

Type	Start	End	Confidence
Cytoplasmic	1	87	0.94
Transmembrane Helix	88	110	0.91
Non-Cytoplasmic	111	158	0.56
Transmembrane Helix	159	183	0.80
Cytoplasmic	184	434	0.52