YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNA2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVATGDPVD EAAALPGHPQ DTYDPEADHE CCERVVINIS GLRFETQLKT LAQFPETLLG  60
   61 DPKKRMRYFD PLRNEYFFDR NRPSFDAILY YYQSGGRLRR PVNVPLDIFS EEIRFYELGE 120
  121 EAMEMFREDE GYIKEEERPL PENEFQRQVW LLFEYPESSG PARIIAIVSV MVILISIVSF 180
  181 CLETLPIFRD ENEDMHGGGV TFHTYSNSTI GYQQSTSFTD PFFIVETLCI IWFSFEFLVR 240
  241 FFACPSKAGF FTNIMNIIDI VAIIPYFITL GTELAEKPED AQQGQQAMSL AILRVIRLVR 300
  301 VFRIFKLSRH SKGLQILGQT LKASMRELGL LIFFLFIGVI LFSSAVYFAE ADERDSQFPS 360
  361 IPDAFWWAVV SMTTVGYGDM VPTTIGGKIV GSLCAIAGVL TIALPVPVIV SNFNYFYHRE 420
  421 TEGEEQAQYL QVTSCPKIPS SPDLKKSRSA STISKSDYME IQEGVNNSNE DFREENLKTA 480
  481 NCTLANTNYV NITKMLTDV

Type	Start	End	Confidence
Cytoplasmic	1	163	0.94
Transmembrane Helix	164	187	0.85
Non-Cytoplasmic	188	221	0.91
Transmembrane Helix	222	242	0.89
Cytoplasmic	243	249	0.81
Transmembrane Helix	250	270	0.84
Non-Cytoplasmic	271	286	0.74
Transmembrane Helix	287	304	0.76
Cytoplasmic	305	327	0.85
Transmembrane Helix	328	349	0.93
Non-Cytoplasmic	350	363	0.82
Transmembrane Helix	364	381	0.78
Cytoplasmic	382	388	0.58
Transmembrane Helix	389	410	0.87
Non-Cytoplasmic	411	499	0.75