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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ome-PG
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNDVSVTE TAQSDQFHLP TTANAAAHHQ YYRFHKQQQQ QHQHHHQQQQ SCLRQQQRQL  60
   61 QWEQQQHQQL QHQLTNSSSE FDEFHWPSKQ TGGENLGGKI YITPADIPPP PQPPHQSGSN 120
  121 SHSHHNGSNR QQQQHQQHPH SLHSHIHPHP HPHHQHGHRT PPHRCKCEHP SIELMGYEDS 180
  181 VIATATASNT AANVGVAGGG GVGRHQHPPY YYKAAVGRRS SAKLHESMLG GGSSLEDDDG 240
  241 TSAGSFGEGM SRFKNLMHTK EKKRRVRIIL TVVTTVIAVA LLATALVFIL RTDEKDADDS 300
  301 DSNSNNAIDL EDVLSGQLYA KRFNGSWSNG NSLIYKENTS IMEFDAKTGE RSILLEDAQH 360
  361 YVLYEKSADG EFLLLAKNYK KNFRYSFLAE YDLYNLNTKE FIQLTIQNEQ HYLSMVQWSP 420
  421 VGNALVINYD RNLYYKESAL AQEIALTSDE QAGILNGIPD WVYEEEVFSS NVATWFNPSG 480
  481 TQLAFIKFDD SSTHLINFPY YGDAGDLRYQ YPLHQVIAYP KAGSSNPRVE LVMVDLKRAV 540
  541 AGGDFVTVMP VPSALNTETD YIVTVVSWVD DDNVLSIWMN RIQNAAYVVT FDGLNRKVIY 600
  601 SAESKTGWVD LYTAPFRNRN GSRLAFVLPH NNYKHVQLLS STVASSEPQA LEPLTEGKYV 660
  661 VDSILHWDGK NDIIFYTANT EDHPEQLHLY AIRALAKQSP KCLTCNLIKS GDVQQTYFSA 720
  721 TFNDNNHIVI TSLGPGIPTT HIYEWKYENS QVVISKVLDW ETNESLRAKL KGVALPSHKI 780
  781 LTVDIDGGFQ AKVLLQLPPN LDTSGATKYP MLVDVYGGPD SYSVTNKWMV DWGTYLSSNQ 840
  841 SVIYAKIDGR GSGLRGESLL HAIYLKLGTV EISDQINVTQ KLSTLFNYID PDHVGIWGWS 900
  901 YGGYAAAMAL ANDEAKVFKC AASIAPVTDW AYYDSIYTER YMGLPNTNEL GYANSRLSTM 960
  961 AVKLRGKKYL LVHGTLDDNV HYQQAMILAK NLERQDILFK QISYADEDHG LSNVRPHLYH1020
 1021 SLDRFFGECF ASSRLMKSAK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle