YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTHAQGHQ PVLGNDTLRE HYDYVGKLAG RLRDPPEGGT LITTILFLVT CSFIVLENLM  60
   61 VLIAIWKNNK FHNRMYFFIG NLALCDLLAG IAYKVNILMS GRKTFSLSPT VWFLREGSMF 120
  121 VALGASTCSL LAIAIERHLT MIKMRPYDAN KKHRVFLLIG MCWLIAFSLG ALPILGWNCL 180
  181 ENFPDCSTIL PLYSKKYIAF LISIFTAILV TIVILYARIY CLVKSSSRRV ANHNSERSMA 240
  241 LLRTVVIVVS VFIACWSPLF ILFLIDVACR AKECSILFKS QWFIMLAVLN SAMNPVIYTL 300
  301 ASKEMRRAFF RLVCGCLVKG KGTQASPMQP ALDPSRSKSS SSNNSSHSPK VKEDLPRVAT 360
  361 SSCIIDKNRS FQNGVLCK

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.94
Transmembrane Helix	42	66	0.86
Cytoplasmic	67	74	0.90
Transmembrane Helix	75	95	0.90
Non-Cytoplasmic	96	116	0.83
Transmembrane Helix	117	135	0.95
Cytoplasmic	136	154	0.92
Transmembrane Helix	155	177	0.93
Non-Cytoplasmic	178	197	0.96
Transmembrane Helix	198	220	0.96
Cytoplasmic	221	239	0.95
Transmembrane Helix	240	263	0.91
Non-Cytoplasmic	264	281	0.88
Transmembrane Helix	282	301	0.95
Cytoplasmic	302	378	0.97