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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NRX1A_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTALVQHGG CCLLCLSLLL LGCWAELGSG LEFPGAEGQW TRFPKWNACC ESEMSFQLKT  60
   61 RSARGLVLYF DDEGFCDFLE LILTRGGRLQ LSFSIFCAEP ATLLADTPVN DGAWHSVRIR 120
  121 RQFRNTTLYI DRAEAKWVEV KSKRRDMTVF SGLFVGGLPP ELRAAALKLT LASVREREPF 180
  181 KGWIRDVRVN SSQALPVDGS EVKLDEEPPN SGGGSPCEAG DEGDGGVCLN GGVCSVVDDQ 240
  241 AVCDCSRTGF RGKDCSQEDN NVEGLAHLMM GDQGKSKEDN NVEGLAHLMM GDQGKEEYIA 300
  301 TFKGSEYFCY DLSQNPIQSS SDEITLSFKT LQRNGLMLHT GKSADYVNLA LKNGAVSLVI 360
  361 NLGSGAFEAL VEPVNGKFND NAWHDVKVTR NLRQHSGIGH AMVNKLHCSV TISVDGILTT 420
  421 TGYTQEDYTM LGSDDFFYVG GSPSTADLPG SPVSNNFMGC LKEVVYKNND VRLELSRLAK 480
  481 QGDPKMKIHG VVAFKCENVA TLDPITFETP ESFISLPKWN AKKTGSISFD FRTTEPNGLI 540
  541 LFSHGKPRHQ KDAKHPQMIK VDFFAIEMLD GHLYLLLDMG SGTIKIKALQ KKVNDGEWYH 600
  601 VDFQRDGRSG TISVNTLRTP YTAPGESEIL DLDDELYLGG LPENKAGLVF PTEVWTALLN 660
  661 YGYVGCIRDL FIDGQSKDIR QMAEIQSTAG VKPSCSRETA KPCLSNPCKN NGMCRDGWNR 720
  721 YVCDCSGTGY LGRSCEREAT VLSYDGSMFM KIQLPVVMHT EAEDVSLRFR SQRAYGILMA 780
  781 TTSRDSADTL RLELDAGRVK LTVNLDCIRI NCNSSKGPET LFAGYNLNDN EWHTVRVVRR 840
  841 GKSLKLTVDD QQAMTGQMAG DHTRLEFHNI ETGIITERRY LSSVPSNFIG HLQSLTFNGM 900
  901 AYIDLCKNGD IDYCELNARF GFRNIIADPV TFKTKSSYVA LATLQAYTSM HLFFQFKTTS 960
  961 LDGLILYNSG DGNDFIVVEL VKGYLHYVFD LGNGANLIKG SSNKPLNDNQ WHNVMISRDT1020
 1021 SNLHTVKIDT KITTQITAGA RNLDLKSDLY IGGVAKETYK SLPKLVHAKE GFQGCLASVD1080
 1081 LNGRLPDLIS DALFCNGQIE RGCEGPSTTC QEDSCSNQGV CLQQWDGFSC DCSMTSFSGP1140
 1141 LCNDPGTTYI FSKGGGQITH KWPPNDRPST RADRLAIGFS TVQKEAVLVR VDSSSGLGDY1200
 1201 LELHIHQGKI GVKFNVGTDD IAIEESNAII NDGKYHVVRF TRSGGNATLQ VDSWPVIERY1260
 1261 PAGNNDNERL AIARQRIPYR LGRVVDEWLL DKGRQLTIFN SQATIIIGGK EQGQPFQGQL1320
 1321 SGLYYNGLKV LNMAAENDAN IAIVGNVRLV GEVPSSMTTE STATAMQSEM STSIMETTTT1380
 1381 LATSTARRGK PPTKEPISQT TDDILVASAE CPSDDEDIDP CEPSSGGLAN PTRVGGREPY1440
 1441 PGSAEVIRES SSTTGMVVGI VAAAALCILI LLYAMYKYRN RDEGSYHVDE SRNYISNSAQ1500
 1501 SNGAVVKEKQ PSSAKSANKN KKNKDKEYYV 

YRC Informatics Platform - Version 3.0
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