YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CBPA3_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFFLLMAVI YTTLAIAPVH FDREKVFRVK LQNEKHASVL KNLTQSIELD FWYPDAIHDI  60
   61 AVNMTVDFRV SEKESQTIQS TLEQHKIHYE ILIHDLQEEI EKQFDVKDEI AGRHSYAKYN 120
  121 DWDKIVSWTE KMLEKHPEMV SRIKIGSTVE DNPLYVLKIG KKDGERKAIF MDCGIHAREW 180
  181 ISPAFCQWFV YQATKSYGKN KIMTKLLDRM NFYVLPVFNV DGYIWSWTQD RMWRKNRSRN 240
  241 QNSTCIGTDL NRNFDVSWDS SPNTNKPCLN VYRGPAPESE KETKAVTNFI RSHLNSIKAY 300
  301 ITFHSYSQML LIPYGYTFKL PPNHQDLLKV ARIATDALST RYETRYIYGP IASTIYKTSG 360
  361 SSLDWVYDLG IKHTFAFELR DKGKSGFLLP ESRIKPTCKE TMLSVKFIAK YILKNTS

Type	Start	End	Confidence
Signal Peptide	1	21	0.87
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	417	0.99