YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM115_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRALPGARQ HLGAILASAS VVVKALCAVV LFLYLLSFAV DTGCLAVTPG YLFPPNFWIW  60
   61 TLATHGLMEQ HVWDVAISLA TVVVAGRLLE PLWGALELLI FFSVVNVSVG LLGALAYLLT 120
  121 YMASFNLVYL FTIRIHGALG FLGGVLVALK QTMGDCVVLR VPQVRVSVVP MLLLALLLLL 180
  181 RLATLLQSPA LASYGFGLLS SWVYLRFYQR HSRGRGDMAD HFAFATFFPE ILQPVVGLLA 240
  241 NLVHGLLVKV KICQKTVKRY DVGAPSSITI SLPGTDPQDA ERRRQLALKA LNERLKRVED 300
  301 QSAWPSMDDD EEEAGAKTDS PLPLEEASTP PGKVTVPESS LITLETAPLL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.72
Transmembrane Helix	21	40	0.84
Non-Cytoplasmic	41	69	0.69
Transmembrane Helix	70	89	0.86
Cytoplasmic	90	97	0.82
Transmembrane Helix	98	120	0.92
Non-Cytoplasmic	121	129	0.74
Transmembrane Helix	130	149	0.92
Cytoplasmic	150	163	0.75
Transmembrane Helix	164	183	0.90
Non-Cytoplasmic	184	189	0.66
Transmembrane Helix	190	208	0.84
Cytoplasmic	209	350	0.77