YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN8A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.93
Transmembrane Helix	128	151	0.89
Non-Cytoplasmic	152	195	0.86
Transmembrane Helix	196	216	0.78
Cytoplasmic	217	226	0.73
Transmembrane Helix	227	246	0.69
Non-Cytoplasmic	247	253	0.62
Transmembrane Helix	254	275	0.92
Cytoplasmic	276	386	0.70
Transmembrane Helix	387	413	0.87
Non-Cytoplasmic	414	746	0.73
Transmembrane Helix	747	770	0.80
Cytoplasmic	771	781	0.71
Transmembrane Helix	782	804	0.86
Non-Cytoplasmic	805	820	0.76
Transmembrane Helix	821	841	0.81
Cytoplasmic	842	864	0.73
Transmembrane Helix	865	889	0.87
Non-Cytoplasmic	890	919	0.79
Transmembrane Helix	920	939	0.70
Cytoplasmic	940	948	0.65
Transmembrane Helix	949	973	0.88
Non-Cytoplasmic	974	1196	0.79
Transmembrane Helix	1197	1220	0.78
Cytoplasmic	1221	1235	0.77
Transmembrane Helix	1236	1255	0.77
Non-Cytoplasmic	1256	1263	0.77
Transmembrane Helix	1264	1284	0.90
Cytoplasmic	1285	1312	0.78
Transmembrane Helix	1313	1339	0.87
Non-Cytoplasmic	1340	1396	0.73
Transmembrane Helix	1397	1417	0.51
Cytoplasmic	1418	1436	0.51
Transmembrane Helix	1437	1462	0.85
Non-Cytoplasmic	1463	1519	0.56
Transmembrane Helix	1520	1539	0.78
Cytoplasmic	1540	1550	0.64
Transmembrane Helix	1551	1574	0.90
Non-Cytoplasmic	1575	1580	0.62
Transmembrane Helix	1581	1604	0.83
Cytoplasmic	1605	1633	0.59
Transmembrane Helix	1634	1650	0.62
Non-Cytoplasmic	1651	1651	0.26
Transmembrane Helix	1652	1674	0.72
Cytoplasmic	1675	1687	0.43
Transmembrane Helix	1688	1705	0.64
Non-Cytoplasmic	1706	1738	0.50
Transmembrane Helix	1739	1763	0.87
Cytoplasmic	1764	1978	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARVLAPPG PDSFKPFTPE SLANIERRIA ESKLKKPPKA DGSHREDDED SKPKPNSDLE  60
   61 AGKSLPFIYG DIPQGLVAVP LEDFDPYYLT QKTFVVLNRG KTLFRFSATP ALYILSPFNL 120
  121 IRRIAIKILI HSVFSMIIMC TILTNCVFMT FSNPPEWSKN VEYTFTGIYT FESLVKIIAR 180
  181 GFCIDGFTFL RDPWNWLDFS VIMMAYVTEF VDLGNVSALR TFRVLRALKT ISVIPGLKTI 240
  241 VGALIQSVKK LSDVMILTVF CLSVFALIGL QLFMGNLRNK CVVWPINFNE SYLENGTRGF 300
  301 DWEEYINNKT NFYMVPGMLE PLLCGNSSDA GQCPEGFQCM KAGRNPNYGY TSFDTFSWAF 360
  361 LALFRLMTQD YWENLYQLTL RAAGKTYMIF FVLVIFVGSF YLVNLILAVV AMAYEEQNQA 420
  421 TLEEAEQKEA EFKAMLEQLK KQQEEAQAAA MATSAGTVSE DAIEEEGEDG VGSPRSSSEL 480
  481 SKLSSKSAKE RRNRRKKRKQ KELSEGEEKG DPEKVFKSES EDGMRRKAFR LPDNRIGRKF 540
  541 SIMNQSLLSI PGSPFLSRHN SKSSIFSFRG PGRFRDPGSE NEFADDEHST VEESEGRRDS 600
  601 LFIPIRARER RSSYSGYSGY SQCSRSSRIF PSLRRSVKRN STVDCNGVVS LIGPGSHIGR 660
  661 LLPEATTEVE IKKKGPGSLL VSMEQLASYG RKDRINSIMS VVTNTLVEEL EESQRKCPPC 720
  721 WYKFANTFLI WECHPYWIKL KEIVNLIVMD PFVDLAITIC IVLNTLFMAM EHHPMTPQFE 780
  781 HVLAVGNLVF TGIFTAEMFL KLIAMDPYYY FQEGWNIFDG FIVSLSLMEL GLADVEGLSV 840
  841 LRSFRLLRVF KLAKSWPTLN MLIKIIGNSV GALGNLTLVL AIIVFIFAVV GMQLFGKSYK 900
  901 ECVCKISQEC KLPRWHMNDF FHSFLIVFRV LCGEWIETMW DCMEVAGQAM CLIVFMMVMV 960
  961 IGNLVVLNLF LALLLSSFSA DNLAATDDDG EMNNLQISVI RIKKGVAWAK VKVHAFMQAH1020
 1021 FKQREADEVK PLDELYEKKA NCIANHTGVD IHRNGDFQKN GNGTTSGIGS SVEKYIIDED1080
 1081 HMSFINNPNL TVRVPIAVGE SDFENLNTED VSSESDPEGS KDKLDDTSSS EGSTIDIKPE1140
 1141 VEEVPVEQPE EYLDPDACFT EGCVQRFKCC QVNIEEGLGK SWWILRKTCF LIVEHNWFET1200
 1201 FIIFMILLSS GALAFEDIYI EQRKTIRTIL EYADKVFTYI FILEMLLKWT AYGFVKFFTN1260
 1261 AWCWLDFLIV AVSLVSLIAN ALGYSELGAI KSLRTLRALR PLRALSRFEG MRVVVNALVG1320
 1321 AIPSIMNVLL VCLIFWLIFS IMGVNLFAGK YHYCFNETSE IRFEIDEVNN KTDCEKLMEG1380
 1381 NNTEIRWKNV KINFDNVGAG YLALLQVATF KGWMDIMYAA VDSRKPDEQP DYEGNIYMYI1440
 1441 YFVIFIIFGS FFTLNLFIGV IIDNFNQQKK KFGGQDIFMT EEQKKYYNAM KKLGSKKPQK1500
 1501 PIPRPLNKIQ GIVFDFVTQQ AFDIVIMMLI CLNMVTMMVE TDTQSKQMEN ILYWINLVFV1560
 1561 IFFTCECVLK MFALRHYYFT IGWNIFDFVV VILSIVGMFL ADIIEKYFVS PTLFRVIRLA1620
 1621 RIGRILRLIK GAKGIRTLLF ALMMSLPALF NIGLLLFLVM FIFSIFGMSN FAYVKHEAGI1680
 1681 DDMFNFETFG NSMICLFQIT TSAGWDGLLL PILNRPPDCS LDKEHPGSGF KGDCGNPSVG1740
 1741 IFFFVSYIII SFLIVVNMYI AIILENFSVA TEESADPLSE DDFETFYEIW EKFDPDATQF1800
 1801 IEYCKLADFA DALEHPLRVP KPNTIELIAM DLPMVSGDRI HCLDILFAFT KRVLGDSGEL1860
 1861 DILRQQMEER FVASNPSKVS YEPITTTLRR KQEEVSAVVL QRAYRGHLAR RGFICRKITS1920
 1921 NKLENGGTHR EKKESTPSTA SLPSYDSVTK PDKEKQQRAE EGRRERAKRQ KEVRESKC