YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S292_MOUSE, S29A...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVWFINSF CAVLQGSLFG QLGTMPSTYS TLFLSGQGLA GIFAALAMLM SLASGVDAQT  60
   61 SALGYFITPC VGILLSIVCY LSLPHLKFAR YYLTEKLSQA PTQELETKAE LLQADEKNGV 120
  121 PISPQQASPT LDLDPEKEPE PEEPQKPGKP SVFVVFRKIW LTALCLVLVF TVTLSVFPAI 180
  181 TAMVTTSSNS PGKWGLFFNP ICCFLLFNVM DWLGRSLTSY FLWPDEDSQQ LLPLLVCLRF 240
  241 LFVPLFMLCH VPQHARLPII FRQDAYFITF MLLFAVSNGY LVSLTMCLAP RQVLPHEREV 300
  301 AGALMTFFLA LGLSCGASLS FLFKALL

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.43
Transmembrane Helix	5	24	0.56
Cytoplasmic	25	31	0.63
Transmembrane Helix	32	53	0.90
Non-Cytoplasmic	54	61	0.66
Transmembrane Helix	62	83	0.93
Cytoplasmic	84	158	0.81
Transmembrane Helix	159	182	0.90
Non-Cytoplasmic	183	193	0.69
Transmembrane Helix	194	214	0.88
Cytoplasmic	215	230	0.73
Transmembrane Helix	231	254	0.83
Non-Cytoplasmic	255	264	0.71
Transmembrane Helix	265	289	0.86
Cytoplasmic	290	299	0.73
Transmembrane Helix	300	323	0.90
Non-Cytoplasmic	324	327	0.63