YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYAS1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQDMPKPSE AARCCSGLAR RALTIIFALL ILGLMTWAYA AGVPLASDRY GLLAFGLYGA  60
   61 FLSAHLVAQS LFAYLEHRRV AAAARRSLAK GPLDAATARS VALTISAYQE DPAYLRQCLT 120
  121 SARALLYPHT RLRVLMVVDG NRAEDLYMVD MFREVFADED PATYVWDGNY HQPWEPAEAT 180
  181 GAVGEGAYRE VEAEDPGRLA VEALVRTRRC VCVAQRWGGK REVMYTAFKA LGDSVDYVQV 240
  241 CDSDTRLDPM ALLELVRVLD EDPRVGAVGG DVRILNPLDS WVSFLSSLRY WVAFNVERAC 300
  301 QSYFHCVSCI SGPLGLYRNN LLQQFLEAWY NQKFLGTHCT FGDDRHLTNR MLSMGYATKY 360
  361 TSRSRCYSET PSSFLRWLSQ QTRWSKSYFR EWLYNALWWH RHHAWMTYEA VVSGLFPFFV 420
  421 AATVLRLFYA GRPWALLWVL LCVQGVALAK AAFAAWLRGC VRMVLLSLYA PLYMCGLLPA 480
  481 KFLALVTMNQ SGWGTSGRKK LAANYVPVLP LALWALLLLG GLARSVAQEA RADWSGPSRA 540
  541 AEAYHLAAGA GAYVAYWVVM LTIYWVGVRR LCRRRSGGYR VQV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	51	0.84
Transmembrane Helix	52	75	0.88
Cytoplasmic	76	404	0.87
Transmembrane Helix	405	428	0.84
Non-Cytoplasmic	429	433	0.46
Transmembrane Helix	434	457	0.84
Cytoplasmic	458	458	0.43
Transmembrane Helix	459	473	0.52
Non-Cytoplasmic	474	474	0.01
Transmembrane Helix	475	489	0.65
Cytoplasmic	490	500	0.62
Transmembrane Helix	501	523	0.80
Non-Cytoplasmic	524	543	0.65
Transmembrane Helix	544	568	0.88
Cytoplasmic	569	583	0.72