YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA3R_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADNTTETD WLNITYITME AAIGLCAVVG NMLVIWVVKL NPTLRTTTVY FIVSLALADI  60
   61 AVGVLVIPLA IAVSLQVKMH FYACLFMSCV LLIFTHASIM SLLAIAVHRY LRVKLTVRYR 120
  121 TVTTQRRIWL FLGLCWLVSF LVGLTPMFGW NRKATLASSQ NSSTLLCHFR SVVSLDYMVF 180
  181 FSFITWILVP LVVMCIIYLD IFYIIRNKLS QNLTGFRETR AFYGREFKTA KSLFLVLFLF 240
  241 ALCWLPLSII NFVSYFDVKI PDVAMCLGIL LSHANSMMNP IVYACKIKKF KETYFLILRA 300
  301 VRLCQTSDSL DSNMEQTTE

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.94
Transmembrane Helix	17	38	0.91
Cytoplasmic	39	48	0.85
Transmembrane Helix	49	72	0.93
Non-Cytoplasmic	73	82	0.78
Transmembrane Helix	83	107	0.92
Cytoplasmic	108	127	0.93
Transmembrane Helix	128	149	0.95
Non-Cytoplasmic	150	181	0.93
Transmembrane Helix	182	202	0.93
Cytoplasmic	203	232	0.89
Transmembrane Helix	233	253	0.91
Non-Cytoplasmic	254	262	0.75
Transmembrane Helix	263	283	0.81
Cytoplasmic	284	319	0.87