YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAMP1_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGLRGLPR CGLWLLLAHH LFMVTACRDP DYGTLIQELC LSRFKENMET IGKTLWCDWG  60
   61 KTIQSYGELT YCTKHVAHTI GCFWPNPEVD RFFIAVHHRY FSKCPISGRA LRDPPNSILC 120
  121 PFIALPITVT LLMTALVVWR SKRTEGIV

Type	Start	End	Confidence
Signal Peptide	1	26	0.88
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	117	0.95
Transmembrane Helix	118	139	0.77
Cytoplasmic	140	148	0.73