YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22003896, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMEPRTEGP RIKAGICKQK NLCTYTIHCS FHGRKQKTHR HELDHAYFLV FLRLFLALAM  60
   61 KIIWSDLIQK IIFFSLIGLG VLGNIILFVR HVCTFIMGPE NKNIDVILIH LAFVNTIIIY 120
  121 CIGVRDIATI FYIRNFLGDV GCKTIIYLER VACGLSICTT CLLSMVQAVT ISPRTTLWRK 180
  181 LKPQTAWHVI AFLLLFWIFN SLISSNLLHY ITVGSSMNSS EVGMFTGYCY KLPSRHTVKW 240
  241 LFLSLMTLRD VIFQGLMGWS SGSMALHLYK HHKRVLYLHS SRSANNSRPE IRATQRVLTL 300
  301 MTCFLFFYWS DFIFSFYTGS TVTHDSTILN IKAF

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	64	0.90
Non-Cytoplasmic	65	70	0.86
Transmembrane Helix	71	93	0.91
Cytoplasmic	94	105	0.89
Transmembrane Helix	106	128	0.88
Non-Cytoplasmic	129	145	0.89
Transmembrane Helix	146	171	0.81
Cytoplasmic	172	185	0.91
Transmembrane Helix	186	210	0.85
Non-Cytoplasmic	211	250	0.91
Transmembrane Helix	251	269	0.92
Cytoplasmic	270	296	0.85
Transmembrane Helix	297	317	0.82
Non-Cytoplasmic	318	334	0.91