YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACOD1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAHMLQEIS SSYTTTTTIT APPSGNEREK VKTVPLHLEE DIRPEMKEDI HDPTYQDEEG  60
   61 PPPKLEYVWR NIILMVLLHL GGLYGIILVP SCKLYTCLFG IFYYMTSALG ITAGAHRLWS 120
  121 HRTYKARLPL RIFLIIANTM AFQNDVYEWA RDHRAHHKFS ETHADPHNSR RGFFFSHVGW 180
  181 LLVRKHPAVK EKGGKLDMSD LKAEKLVMFQ RRYYKPGLLL MCFILPTLVP WYCWGETFVN 240
  241 SLFVSTFLRY TLVLNATWLV NSAAHLYGYR PYDKNIQSRE NILVSLGAVG EGFHNYHHTF 300
  301 PFDYSASEYR WHINFTTFFI DCMAALGLAY DRKKVSKATV LARIKRTGDG SHKSS

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	89	0.88
Non-Cytoplasmic	90	98	0.70
Transmembrane Helix	99	119	0.93
Cytoplasmic	120	212	0.96
Transmembrane Helix	213	234	0.88
Non-Cytoplasmic	235	246	0.81
Transmembrane Helix	247	269	0.69
Cytoplasmic	270	280	0.72
Transmembrane Helix	281	298	0.43
Non-Cytoplasmic	299	310	0.59
Transmembrane Helix	311	330	0.58
Cytoplasmic	331	355	0.88