YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27734108, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGPGAGA ASGGASGGGA GAGGGACAGS GSSGVGGRLP SRVLELVFSY LELSELRSCA  60
   61 LVCKHWYRCL HGDENSEVWR SLCARSLAEE ALRTDILCNL PSYKAKVRAF QHAFSTNDCS 120
  121 RNVYIKKNGF TLHRNPIAQS TDGARTKIGF SEGRHAWEVW WEGPLGTVAV IGIATKRAPM 180
  181 QCQGYVALLG SDDQSWGWNL VDNNLLHNGE VNGSFPQCNN APKYQIGERI RVILDMEDKT 240
  241 LAFERGYEFL GVAFRGLPKA CLYPAVSAVY GNTEVTLVYL GKPLDG

Type	Start	End	Confidence
Signal Peptide	1	22	0.76
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	286	0.92