YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123235921
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMLFNKVLR AGVQAGLRFQ GTSAQASAKA ATASLKGGNG GFSFELTEQQ KEFQEVARKF  60
   61 AREEIVPAAP SYDRSGEYPF PLIKRAWELG LMNGHIPEDC GGMGLGIFDA CLITEELAYG 120
  121 CTGVQTAIEA NSLGQMPVII AGNDAQRKKY LGRMTEEPLM CAYCVTEPGA GSDVAGIKTR 180
  181 AVKKGDDYVI NGQKMWITNG GKANWYFLLA RTDSDPKCPA SKAFTGFIVD ADTPGVQPGR 240
  241 KELNMGQRCS DTRGITFEDV VIPKENVLIG EGAGFKIAMG AFDKTRPPVA AGATGLAQRA 300
  301 LEEATKYAME RKTFGKFIAE HQAVSFLLAE MAMKVELARM AYQRAAWEVD MGRRNTYYAS 360
  361 IAKAFAGDIA NQCASDAVQI FGGNGFNSEY PVEKLMRDAK IYQIYEGTAQ IQRLIISREV 420
  421 LGKFKQ

Type	Start	End	Confidence
Signal Peptide	1	26	0.61
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	426	0.99