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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LAMC1_DANRE
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFSCLLLW TLWAACSHGA MDECIDEDDR PQRCMPEFVN AAFNATVVAT NTCGSPPEEF  60
   61 CVQTGVTGVT KSCHICNAAD PRLHHGAVYL TDYNQPVQPT WWQSQTMLAG IQYPNSINLT 120
  121 LHLGKSFDIT YVRLKFHTSR PESFAIYKRS SEDGPWTPYQ YYSGSCEKTY SKNNRGFIRT 180
  181 GEDEQQALCT DEFSDISPLY GGNVAFSTLE GRPSAYNFDN SPVLQDWVTA TDIRVTLNRL 240
  241 NTFGDEVFND PKVLKSYYYA ISDFAVGGRC KCNGHASECV KNEYSKLVCN CKHNTEGADC 300
  301 NVCKPFYNDR PWRRATAENP NECLPCNCNG KSAECYFDPE LYRATGHGGH CRNCADNTDG 360
  361 PKCERCLANY YREASGQRCL SCGCNPVGSL STQCDNTGRC SCKPGVMGDK CDRCQPGYHS 420
  421 LSEAGCRPCS CNPAGSTQEC DVQTGRCQCK ENVDGFNCDR CKLGYFNLDP QNPQGCTPCF 480
  481 CFQHSTVCES ADGYSVHKIT STFDRDDEGW KGKQRDDSSV PVQWSPSSGE ISLISEDYFP 540
  541 IYFVAPDKFL HNQLLSYGQN LTLNFRIQRH DARLSAEDVV LEGSGLRVAV PLIAQGNSYP 600
  601 GEETQTFVFR LHDTTDYPWR PTIKHADFQK LLYNLTSIMI RGTYSAQSAG YLDNVSLVTA 660
  661 RRGPGTPARW VEKCTCPQGY LGQHCEQCDQ GFRRSRPELR RFSTCERCNC NGHSDTCDPE 720
  721 TGMCNCQHNT AGLSCERCKD GFYGDSTVGS SSDCKACPCP AGATCAVVPK TNEVVCTNCP 780
  781 TGTTGKRCEL CDDGFFGDPL GEKGPVRACR ACSCNNNIDP NAVGNCNRES GECLKCIYNT 840
  841 AGVFCDRCKQ GFYGDARAAN VADKCKPCKC SPYGTVDRQT ACSQVTGQCP CLPHVINRDC 900
  901 GACELGFYNL QSGKGCERCN CNPIGSTNGQ CDIVSGQCEC QPGVTGQHCE RCEVNFFGFS 960
  961 SSGCKPCDCD PEGSESAQCK EDGRCHCRPG FVGSRCDMCE ENYFYNRSTP GCQQCPNCYS1020
 1021 LVRDKVNQQR QKLLDLQNLI DSLDNTETTV SDKAFEDRLK EAEKTIMDLL EEAQASKEVD1080
 1081 KGLLDRLNNI NKTLNNQWNR LQNIKNTVDN TGAQADRARN RVRDAENLIN TAREELDKAK1140
 1141 EAISKVDIKI PTTSGDPNNM TLLAEEARKL SEKHKADADQ IEKIAKDAND TSTKAYNMLK1200
 1201 KALDGENKTS SDIDELNRKY LEAKDLAKNL EKQAAKVHAE AEEAGNKALK IYANLTSLPP1260
 1261 INTKTLEDDA NKIKKEASDL DKLIDKTEKE YNDLREDLRG KETEVRKLLD KGKTEQQTAD1320
 1321 QLLARADAAK ALAEEAAKKG KSTFQEAQDI LNNLRDFDKR VNDNKTAAED AMRRIPQINA1380
 1381 TINEANDKTR RAEAALGNAA ADAKDAKAKA EEAEKIANDV QKGSAKTKAD AEKAFEDTMK1440
 1441 LDKDVDKMMD QLTAAEKELE KKKAEADTDM MMASMASDNA KDAEGNARKA KSAVREVLNT1500
 1501 INALLGQLGN IDKVDLSKLN QIDNALKDAK DKMAGSELDR KLKELNDIAK SQEDMISDYD1560
 1561 RQIQEIRADI ANLNDIKNTL PEGCFNTPSL ERP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle