YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APH1C_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPVFFGCA FIAFGPAFAL YLFTIATDPL RVIFLIAGAF FWLVSLLLSS MFWFLVRVIT  60
   61 NNRDESVQNY LLIFGALLSV CIQELFRLAY YKLLKKASEG LKSINPEEDI APSMRLLAYV 120
  121 SGLGFGIMSG VFSFVNTLSN SLGPGTVGIH GDSPQFFLNS AFMTLVVIML HVFWGVVFFD 180
  181 GCEKNKWYTL LTVLLTHLVV STQTFLSPYY EVNLVTAYII MVLMGIWAFY VAGGSCRSLK 240
  241 FCLLCQDKDF LLYNQRSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.76
Transmembrane Helix	6	25	0.95
Cytoplasmic	26	31	0.78
Transmembrane Helix	32	55	0.91
Non-Cytoplasmic	56	69	0.77
Transmembrane Helix	70	91	0.80
Cytoplasmic	92	115	0.93
Transmembrane Helix	116	135	0.94
Non-Cytoplasmic	136	155	0.87
Transmembrane Helix	156	178	0.91
Cytoplasmic	179	186	0.88
Transmembrane Helix	187	206	0.96
Non-Cytoplasmic	207	213	0.83
Transmembrane Helix	214	234	0.92
Cytoplasmic	235	258	0.95