YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCD3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGHLLQEEM TPSYTTTTTI TAPPSGSLQN GREKVKTVPL YLEEDIRPEM KEDIYDPTYQ  60
   61 DEEGPPPKLE YVWRNIILMA LLHVGALYGI TLVPSCKLYT CLFAFVYYVI SIEGIGAGVH 120
  121 RLWSHRTYKA RLPLRIFLII ANTMAFQNDV YEWARDHRAH HKFSETHADP HNSRRGFFFS 180
  181 HVGWLLVRKH PAVKEKGGKL DMSDLKAEKL VMFQRRYYKP GILLMCFILP TLVPWYCWGE 240
  241 TFLNSFYVAT LLRYAVVLNA TWLVNSAAHL YGYRPYDKNI DPRQNALVSL GSMGEGFHNY 300
  301 HHAFPYDYSA SEYRWHINFT TFFIDCMAAL GLAYDRKRVS KATVLARIKR TGDGSHKSG

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	92	0.89
Non-Cytoplasmic	93	102	0.67
Transmembrane Helix	103	123	0.93
Cytoplasmic	124	216	0.95
Transmembrane Helix	217	238	0.89
Non-Cytoplasmic	239	250	0.76
Transmembrane Helix	251	273	0.63
Cytoplasmic	274	285	0.68
Transmembrane Helix	286	302	0.34
Non-Cytoplasmic	303	314	0.54
Transmembrane Helix	315	334	0.56
Cytoplasmic	335	359	0.90