YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGLU3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.98
Transmembrane Helix	78	101	0.84
Non-Cytoplasmic	102	128	0.92
Transmembrane Helix	129	150	0.86
Cytoplasmic	151	158	0.74
Transmembrane Helix	159	178	0.91
Non-Cytoplasmic	179	184	0.71
Transmembrane Helix	185	207	0.82
Cytoplasmic	208	219	0.87
Transmembrane Helix	220	242	0.89
Non-Cytoplasmic	243	249	0.77
Transmembrane Helix	250	270	0.92
Cytoplasmic	271	311	0.96
Transmembrane Helix	312	336	0.82
Non-Cytoplasmic	337	352	0.88
Transmembrane Helix	353	375	0.86
Cytoplasmic	376	391	0.84
Transmembrane Helix	392	410	0.78
Non-Cytoplasmic	411	415	0.60
Transmembrane Helix	416	438	0.87
Cytoplasmic	439	448	0.66
Transmembrane Helix	449	472	0.89
Non-Cytoplasmic	473	480	0.70
Transmembrane Helix	481	503	0.86
Cytoplasmic	504	590	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLGGFAGLK EKLNPGKEEL KNNVGDSLGN LQKKIDGSNV TEEDNIELTE DGRPVAAPKR  60
   61 SPPLLDCGCF GLPKRYIIAM LSGLGFCISF GIRCNLGVAI VEMVNNNTVY INGTAVMQPA 120
  121 QFNWDPETVG LIHGSFFWGY IVTQIPGGFI SNKLAANRVF GAAIFLTSVL NMFIPSAARV 180
  181 HYGCVMFVRI LQGLVEGVTY PACHGMWSKW APPLERSRLA TTSFCGSYAG AVIAMPLAGI 240
  241 LVQYVGWPSV FYIYGVFGII WYIFWILLAY NSPAVHPTIS EEERNYIETS IGEGANLMSS 300
  301 TEKFKTPWRE FFTSMPVYAI IVANFCRSWT FYLLLISQPA YFEEVFGFPI SKVGILSAVP 360
  361 HMVMTIIVPI GGQLADFLRS RKILSTTTVR KIMNCGGFGM EATLLLVVGF SHTRAVAISF 420
  421 LILAVGFSGF AISGFNVNHL DIAPRYASIL MGISNGVGTL SGMVCPLIVG ALTKHKTRLE 480
  481 WQHVFVIASM VHYTGVIFYA IFASGEKQDW ADPENTSDEK CGIIGEDELA DETEPSSDSG 540
  541 LATRQKTYGT TDNSSGRKQG WKKKRGVTMQ AEDDHESNHY ENGEYQTQYQ