YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|122890953
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKSSHPPP YGSRHQHRSS HRTVSYHPDE MLHFYSWKSP PGVMKILCII IIIMCVAMFA  60
   61 CVAATLAWDY DANNMGLGGL ASLGMGSSGG GYNGGSYNGG SAGGYGGYGG GMGGYGGGMG 120
  121 GYGYGGGTYM DPKSGKGFII SIAAITFIAI LIIFILVVSR QSSSQSPKFY LATIIICAIL 180
  181 AALMLIATIV YLVTVNPTSQ TSGSMMYNQI LQLCAQYQNQ DQASGIFINQ YLYHYCVVDP 240
  241 EEAIAIVLGV LVVIGLIILL VFAVKTRGLI RKYGRDRVLW YDVKTIKDGL TSQGIGEWIN 300
  301 NVSGDPEVFV NDQNDKVSAA QPMVYSQKPI YLPSSASDLT SSVSGLKGKL RAYDAGESGD 360
  361 ELDTEYETEY PPIINEQERL EYKRDFDRDH MVYKRLQAEL DDINQGLADA DRELDRLEEG 420
  421 SPQFMDVMDE YNRLKSLKKS TDYQMKKRKC KQLKSKLSLI KRRVSDYDHR Q

Type	Start	End	Confidence
Cytoplasmic	1	45	0.96
Transmembrane Helix	46	67	0.96
Non-Cytoplasmic	68	74	0.85
Transmembrane Helix	75	95	0.92
Cytoplasmic	96	103	0.79
Transmembrane Helix	104	125	0.89
Non-Cytoplasmic	126	136	0.89
Transmembrane Helix	137	158	0.95
Cytoplasmic	159	168	0.92
Transmembrane Helix	169	193	0.91
Non-Cytoplasmic	194	242	0.97
Transmembrane Helix	243	264	0.95
Cytoplasmic	265	471	0.99