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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|189518945, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.64
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSEEM CLAQLFLQSG SAYDCISELG ELGLVEFRDL NPSVNSFQRK FVNEIKRCEE  60
   61 MERILGYLLR EIKKEDIPLP EGEVNPAAPL PKHVMVIMEQ LQRLELELGE VTRNKEKLQK 120
  121 NLLELTEYTH MLRITRNFVH RGTERESTQG QYEEFPFLEK EPMMDYTSMQ RLGAKLGFIS 180
  181 GLIQSVKIEA FERMLWRVCK GYTILSYSEV DELLDDPDSG EPTRSVVFLI SYWGEQIGQK 240
  241 VKKICDCYHC HLYPYPNSNE ERTDVVEGLR TRIQDLHTVL HRTEDYLRQV LIKASESVYI 300
  301 WVIQVKKMKA IYHILNLCSF DVTNKCLIAE VWCPVNDLPA LRRALEDGSR KSGATVPSFV 360
  361 NRIPSSDTPP TLIRTNKFTS GFQNIVDAYG VSSYREVNPA PYTIITFPFL FAVMFGDLGH 420
  421 GIIMALFALW MVLYENDRKL KKTRNEIWNI FFEGRYIILL MGVFSVYTGL IYNDCFSKSL 480
  481 NIFGSGWNVS AMFENGDWTL STVNSNKLLA LDPNITGVFK GPYPLGIDPI WNLASNRLTF 540
  541 LNSYKMKMSV IVGIIHMTFG VVLGIFNHLH FRRTINVYLI FLPELLFLLC LFGYLVFMII 600
  601 YKWLFFTVRD SQTAPSILIH FINMFLMMGD SGRPLYPGQA GFQVFLVIVA VFSVPVLLFG 660
  661 KPLYIYWQHK GRDRLSMYRG YQRVRRSSEE ELSLLHTHDL EEGSSLDSHS SSSDSQSEEP 720
  721 DFPDLFLNQS IHTIEYCLGC ISNTASYLRL WALSLAHAQL SEVLWEMVMR VALHVDTSVG 780
  781 IVLLVPVFGL FAVLTVSILL VMEGLSAFLH ALRLHWVEFQ NKFYSGVGVK FIPFAFSLMH 840
  841 SSFEKDGLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle