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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|122890780, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDHTSFLCQ SHHPRWQTQS SAGKRRRKQS SSQKSETPAS PVSSSPVLRS HSWWGNCFLL  60
   61 PLVMLSYFPC EAWGTTFKIA IVGPWACDPM YSKALPDLAA RLAMSRINKD PELNKGYWYD 120
  121 YTVINEDCSS SRGLARFAEL EGYGSAFLGP ANPGYCTAAT LLAKNWNKGI LSWGCLKAEM 180
  181 DEEMYPTFLR PLPLSSRVLF SVLRFFRWAH VGIVTAEGDM WEATGHELAA SLRALGLPVG 240
  241 KVVTMEQDKE GPRQALQAIR DTDRVRVVIM CMHSALIGGE EQYQLLTTAL EMRMIDRGYI 300
  301 FIPYDTLLYS LPYENVKYPI LANDSKLRRA YDGVLTVTMD QGEQNFYEAF NAAQESFEIR 360
  361 GSTSAEEVSP FFGTIYNMIY YTAMAAEQSR ASSGGRWVSG DLLSQNEGGF EFDGFNQRIS 420
  421 GGTNGEGMQV RYAVLDSDGS GSSLYRTHAL EASHTYGKYG GLKYLGKSIH FAGASPSSDA 480
  481 NCWFSPYIAC SGGNKNNRLD GVTLFFLLMF FIVLIAGAGI LFLQVRKYGA GGFFGAFIGG 540
  541 GGSPTKIVLT LDDLVFINTT LSRRKLNDES MLKSQLDVKT PRHSVSGRSY ITSTPETSNV 600
  601 AVFEVWEICE FLCTGIVFGS MMKQYYMRKC DFLTGYQKGD WVWLKKCPCA DSITEISEST 660
  661 QTIFVKLRDM RHENLNLFLG LFMDTGIFGI VTEHCTRGSL EDLLNNEEMR LDWMFKSSLL 720
  721 LDLIRGMKYL HNRGIIHGRL KSRNCVVDGR FVLKVTDYGF NEILNCQNII LEDNAPEDQF 780
  781 WTAPEILRNP DLKKKGTYPG DVYSFSIIMQ EVISRCAPFC MLDMPPEEII EKVRSPPPLC 840
  841 RPTVSMDEAP LDVIQLMKQA WSEEPEQRPT FEDIFRQFKS MNKGKKTNII DSMLRMLEQY 900
  901 SSNLEDLIRE RTEELEVERQ KTDALLAQML PKSVALALKT GKPVKPEHFA EVTLYFSDIV 960
  961 GFTTISALSE PIEVVDLLND LYTHFDGIIA IHDVYKVETI GDAYMVASGV PNRNGTRHAA1020
 1021 EMANMSLDIL HCIGTFKMRH MPDVKVKIRI GLHSGPVVAG VVGLKMPRYC LFGDTVNTAS1080
 1081 RMESTGLPYR IHVNQSTVDV LNSLKLGYKI DTRGRTELKG KGVEETFWLV GRDGFDKPLP1140
 1141 IPPDLTPGAS NHGISLDEIP TDRRQKFLDR QKRMGN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle