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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|122890526
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSSFFQFG ASLQQEALLM LAIMEEYDWH VFSVVTTKFP GFQEFIATVR VTVDHSFVRW  60
   61 DLQSVVTLDG VGEPEDRAHV QLKRIQSPVI LLYCSKDEAA LVMEEARSLG LTGAGFVWIV 120
  121 PSLTTGNLEH IPEAFPAGMI SVTYDEWDYP LETRLQDAVG IISSAAAAMF REEGRIPDGT 180
  181 ASCYGQSEKP EVPPSALRRY MMGVNLGGKD HSFMDDGYQV NPKLVVIVLN TEREWEKMGR 240
  241 WENHSLRLKF PVWPRYNSFG DMDADENHLS IVTLEERPFV IVDDVDILTG TCMRNSVPCR 300
  301 KHIKDNTTEG SYVKKCCKGF CIDILKKIAR NVKFTYDLYL VTNGKHGKKI NNVWNGMVGE 360
  361 VVYKKAVMAV GSLTINEERS EAIDFSVPFV ETGISVMVSR SNGTVSPSAF LEPFSASVWV 420
  421 MMFVMLLIVT AIAVFLFEFI SPLGFNRNLA QGKDPHGPSF TIGKAVWLLW GLVFNNSVPV 480
  481 QNPRGTTSKF IVSVWAFFAV IFLASYTANL AAFMIQEEFV DQVTGLSDRK FQSPYSYSPP 540
  541 FRFGTVPNGS TERNIRKNYP AMHQYMVKYH QTGVVDALVS LKTGKLDAFI YDAAVLNYMA 600
  601 GRDDGCKLVT IGSGYIFATT GYGIAMQKGS YWKRLVDLAI LGIIGDGEME ELEAQWLTGI 660
  661 CHNEKNEVMS SQLDVDNMAG VFYMLAAAMA LSLITFVWEH LFYWRLRYCF TGLCSGRPGI 720
  721 LFTISRGIWS CIHGVHIELK KAPELDFSPQ ANMLHLLKSA KEITTLGVTS PKRPMSSILP 780
  781 PTSGLLELMG GGKGNNLAPK NPPYSNTSTM LSNRLKEPLN NTLLPGQRAL SLTDAQPGVA 840
  841 GNGGSTGGGE TMRPPASKPR ALWKKSVETL RQNQGPEDSS PPSAPQAAET LPMKSQRYLP 900
  901 EEAPSIDISD CSARVDLQKQ HKLKETIRKR NRLPRDLSDV ELSTLRSQPS QQSNHSAHIY 960
  961 SQSSQGSQIY SIDSIDQEHG LHYPDIFSDH RDNKHRPPSS SEQQPILQLS SSLLSQAHEP1020
 1021 DVMQTAVAKD KKYNTYGKPG GAGSIAGGPA STQDPRQTHC RSCLSKVSSY SGLYTVRSPQ1080
 1081 YRCDACLHSG NLYDISEDQF LHPDGRGTGG GSVDRAFSPF LPQPDASFTA YLPQSDQEGD1140
 1141 GLISHYQNEG VIIRQHSYEN LPQKSSSRRV SLQDNTPYAN IPSATLMPDK PPKTQPVHLN1200
 1201 HTLSGVGVSG LGIGRRSKSM YPARPTENPF LQTLRDDQRL AHGRSSTDIY KQLVPLTLGQ1260
 1261 ADGSVLSMGM PTPDLYYSEH VMPYVAPPPI GTYTAPRALS AGGARRVYKR MPSIESDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle