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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VGFR2_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.69
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTSYALLL LDILLTFNVA KAIELRFVPD PPTLNITEKT IKINASDTLQ ITCRGRQILE  60
   61 WSTPHNRTSS ETRLTISDCS GDGLFCSTLT LSKAVANETG EYRCFYKSLP KEDGKTSVAV 120
  121 YVFIQDYRTP FVRIAQDYDV VFIREGEQVV IPCLVSVEDL NVTLYTKYPV KELSTDGKEV 180
  181 IWDSRRGFIL PSRVVSYAGV VYCQTTIRNE TFQSSPYIVA VVGYKIYDLT LSPQHERLTV 240
  241 GERLILNCTA HTELNVGIDF QWTFPHEKRS VNGSMSTSRY KTSSNKKKLW NSLELSNTLT 300
  301 VENVTLNDTG EYICTASSGQ MQKIAQASLI VYEKPFIALS DQLWQTVEAK AGDAEAKILV 360
  361 KYYAYPEPAV RWYKNDQLIV LRDEYRMKFY RGVHLTIYGV TEKDAGNYTV VMTNKITKEE 420
  421 QRRTFQLVVN DLPRIFEKDV SLDRDVHMYG SSPTLTCTAS GGSSPVTIKW QWMPREDCPV 480
  481 RFLPKSDTRM AKCDKWREMS NNTGKNPLIS QTSVDERTLK TISTLKIQKA VDHALYRCIA 540
  541 TNKMGQDQRV IVFQVTRFLN LSVLPSSSPI EGQDVIMRCV ADRLLYYNLR WYRVANVANH 600
  601 DPPPAAVPCD TLTLSHLHQP NVTVSGLQGT NVTLDMPIPN ATMMDQGLYA CQVEIVGTNE 660
  661 KTCLLHNLRL RALEMSRIVT NLTDQRVNVS DSTTLVCEVS GTPTPTIVWT KDNQTVMEGS 720
  721 GVILKRSNRV LTIQRVKKED SGLYICTACN QQGCESSEAR ISVDGAEEKM NVELIMPIGA 780
  781 VVIAMFLWLL IVFVIRNRKR PNDGDLKTGY LSIILDSDDM PMDEHCERLT YDASKWEFPR 840
  841 DRLKLGEPLG RGAFGQVVEA TAYGIEKATT CTTVAVKMLK EGATSSEYRA LMSELKILIH 900
  901 IGHHLNVVNL LGACTKQGGP LMVIVEYCKH GNLSSYLKSK RGEYSPYKKR TPRMPNRREV 960
  961 QQDEDPREGD LGLGTSTRLD ICTGTAVCTR TGEQTYKTLQ DEQESSDWDH LTMEDLISYS1020
 1021 FQVAKGMEFL ASRKCIHRDL AARNILLSEN SVVKICDFGL ARDVYKDPDY VRKGDARLPL1080
 1081 KWMAPETIFD RVYTTQSDVW SFGVLLWEIF SLGASPYPGV CIDESFCRRL KEGTRMRAPD1140
 1141 YATPEIYQTM LDCWLDRPLD RPTFTQLVEH LGNLLQASAQ QDGKDYIPLT NGEMEEELVA1200
 1201 PHLNVTSKRS FYAGNTEAQL HYDNAPPLGF PQQMNSSGVP VNMTGFVDIP LEHTTVMDGH1260
 1261 VDCGVGLSRE QMKALDRQAQ RPLNFSPLLR CKSKESLASE SSNQTSGYQS GYHSDDAEAP1320
 1321 IYANEEMILK RDIRKKPPLP KRNDKFSAEV RYSAPPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle