YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12659138
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	1084	0.98
Transmembrane Helix	1085	1105	0.45
Cytoplasmic	1106	1111	0.32
Transmembrane Helix	1112	1139	0.50
Non-Cytoplasmic	1140	1162	0.45
Transmembrane Helix	1163	1177	0.54
Cytoplasmic	1178	1178	0.19
Transmembrane Helix	1179	1193	0.50
Non-Cytoplasmic	1194	1214	0.44
Transmembrane Helix	1215	1239	0.64
Cytoplasmic	1240	1240	0.31
Transmembrane Helix	1241	1270	0.54
Non-Cytoplasmic	1271	1303	0.45
Transmembrane Helix	1304	1330	0.60
Cytoplasmic	1331	1338	0.39
Transmembrane Helix	1339	1361	0.70
Non-Cytoplasmic	1362	1372	0.45
Transmembrane Helix	1373	1393	0.72
Cytoplasmic	1394	1399	0.43
Transmembrane Helix	1400	1421	0.68
Non-Cytoplasmic	1422	1454	0.40
Transmembrane Helix	1455	1481	0.59
Cytoplasmic	1482	1484	0.32
Transmembrane Helix	1485	1511	0.66
Non-Cytoplasmic	1512	1514	0.39
Transmembrane Helix	1515	1547	0.57
Cytoplasmic	1548	1845	0.51
Transmembrane Helix	1846	1869	0.53
Non-Cytoplasmic	1870	1921	0.48
Transmembrane Helix	1922	1955	0.54
Cytoplasmic	1956	1987	0.35

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRNDHGHR VPTFQGPLPP AGSLGLPFSP DVQSETTEKD PPIASRSKKN KNKKNSIKPM  60
   61 DKTTPAPPPV PSANDNASNK PKVTLQALNL PMFTQISQAS ATTEAPNIQA SVTSQTQKAK 120
  121 TMRVTPKVSL TGSEDATTQL KPPLQALNLP VTTPTIQTPV ANESANSLAS TAVNKSKKAS 180
  181 TANNAANKTV PSAAEISLAS AATHTVTTQG QAAKETGSIQ TIAATARSKK IPKGKRTPAK 240
  241 TTNTDNEYVE ASNAIEASSR QIGASGRQTE ASNRQIEASS RQTEASNRQT EASSRQTEAS 300
  301 SRQTETSNRQ IGASNRQIMA SNRQIGASNR QIEASNRQIG ASNRQTEVSS RQIEASNRQI 360
  361 GASNRQTEAS NRQIGASNRQ TEASNRQIGA SNRQTDASNR QTDASNRQTE ASSRQTEASS 420
  421 RQTEASSRQT EASSRQIEAS AAAVRPKKPR GKKGTNKGSN SASEPSEAPP AIQTVTNHAL 480
  481 SVTVRIRRGS RARKAANKNR ATESQAQIAE QGAQASEASI SALETQVAAA VQALADDYLA 540
  541 QLSLEPTTRT RGKRNRKSKH PNGEERTGNN YRRIPWGRRL PPPRDVAILQ ERANKLVKYL 600
  601 LVKDQTKIPI KRSDMLKDVI QEYEDYFPEI IERASYALEK MFRVNLKEID KQNNLYILIS 660
  661 TQESSAGIMG TSKDTPKLGL LMVILSVIFM NGNKASEAVI WEVLRKLGLH PGVKHSLFGE 720
  721 VKKLITDEFV KQKYLEYKRV PNSRPPEYEF FWGLRSYHET SKMKVLKFAC KVQKKDPKDW 780
  781 AAQYREAVEM DIQAAAVAVA EAKARAEARA QMGIGEEAVA GPWNWDDMDI NCLTREELGD 840
  841 DAQAWCRFSF EIEPRAQENA DPTTNVLFNQ GATTRNSFSD GAGISFGGIT NPSGGFGGIS 900
  901 NPSGGFGGIS NPSGGFGGIS NPSGGFGGIS NPSGGFGGIS NPSGGFGGIS NPSGGFGGIS 960
  961 NPSGGFGGIS NPSGGFGGIS NPSGGFGGIS NPSGGFGGIS NPSGGFGGRN SITFGSVPNT1020
 1021 SANFSSAPSI SFGDTPNTST SFSGGANSSF SGTPSTSAPF CNTASISFGG APSTSTSFST1080
 1081 ASISFGGAPS TSTSLSTASI SFGGAPSTST SFSTASISFG GAPSTSTSLS TASISFGGAP1140
 1141 SINSSSGGSS VSFGGAPTTS TSFSGGPCIS FGGAPCTTAS ISGGASSGFG STLCSTNPGF1200
 1201 SALSTNTSFG SAPTTSTVFS GAVSTTTGFG GTLSTSVCFG SSPYSGAGFG GTLSTSISFG1260
 1261 GSPSTNTGFG GTLSTSVSFG ASSSTSSDFG GTLSTSVSFG GSSGANAGFG GTLNSSTSFG1320
 1321 GAISTSTGFG SALNNSANFG GAISTSFSGV LNSSASFGGA INTSAGFGST LNSSASFGSA1380
 1381 LSTSASFGGV LNGRAGFGGA LNTNATFGGV LNGSAGFGGA MNTNATFGGA LNSNAGFGGA1440
 1441 ISTSTNFGGA LNNSAGFGGA MNTSASFGGV LNNSAGFGGA INTSANFGGA LTNSAGFGGA1500
 1501 ISTSASFGGA LNNSAGFGGA ISTSASFGGA LNNSAGFGGA ISTNASFGGA ISNSPDFGGA1560
 1561 FSTSVGFGGT LNTTDFGSNH SNSISFGSAP TTSVSFGGSH STNLCFGGAP STSLCFGSAS1620
 1621 NTNLCFGGSN STNCFSGATS ANFNEGHSIS FGNGLSTSAG FGNGLGTSAG FDSSLGTSTG1680
 1681 FGGSLGPSAS FNGGLGTSTG FGGGLGTSTD FSGGLNHNAD FNGGLGNSAG FNGGLNTNTD1740
 1741 FGGELGTSAG FGDGLGSSTS FGAGLVTSDG FAGNLGTNTG FGGTLGTGAG FSVSLNNGNG1800
 1801 FGNGPNASFN RGLNTIIGFG SGSNTSNGFT GEPNTGSSFS NGPSSIVGFS GGPSTGAGFC1860
 1861 SGPSTGGFGG GPSTGPGFGG PSTGPGFGGP STGGGFGGPN TGGGFGGPST GGGFGGPSTG1920
 1921 GGFGGPSTGG GFGGPSTAAG FGSGLSTSTG FGGGLNTSAG FSGGPPSTGT GFGGGASSHG1980
 1981 GCGFPYG