YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT5_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.54
Transmembrane Helix	55	75	0.90
Cytoplasmic	76	92	0.85
Transmembrane Helix	93	114	0.90
Non-Cytoplasmic	115	120	0.69
Transmembrane Helix	121	141	0.80
Cytoplasmic	142	149	0.62
Transmembrane Helix	150	166	0.90
Non-Cytoplasmic	167	197	0.73
Transmembrane Helix	198	218	0.83
Cytoplasmic	219	236	0.86
Transmembrane Helix	237	257	0.92
Non-Cytoplasmic	258	264	0.85
Transmembrane Helix	265	286	0.91
Cytoplasmic	287	301	0.84
Transmembrane Helix	302	320	0.95
Non-Cytoplasmic	321	339	0.92
Transmembrane Helix	340	360	0.94
Cytoplasmic	361	416	0.97
Transmembrane Helix	417	437	0.94
Non-Cytoplasmic	438	447	0.79
Transmembrane Helix	448	467	0.94
Cytoplasmic	468	483	0.80
Transmembrane Helix	484	503	0.92
Non-Cytoplasmic	504	518	0.85
Transmembrane Helix	519	541	0.88
Cytoplasmic	542	587	0.97
Transmembrane Helix	588	609	0.93
Non-Cytoplasmic	610	614	0.86
Transmembrane Helix	615	637	0.91
Cytoplasmic	638	761	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKYGGDAR PGPGGGLGPV DVPSARLTRY ILLLCLTKCL KAVGLFESYD LLKAVHIVQF  60
   61 IFILKLGTAF FMVLFQKPFS SGKPITKHQW IKIFKHAVAG CIISLLWFFG LTLCGPLRTL 120
  121 LLFEHSDIVV ISLLSVLFTS SGGGPAKTRG AAFFIIAVIC LLLFDNDDLM AKMAEHPEGH 180
  181 HDSALTHMLY TAIAFLGVAD HKGGVLLLVL ALCCKVGFHT ASRKLSIDVG GAKRLQALSQ 240
  241 LVSVFLLCPW VIVLSVTTES KVESWFSLIM PFTTVIFFVM ILDFYMDSVC SVKMDVSKCA 300
  301 RYGSFPIFIS ALLFGNFWTH PITDQLRAMN RAAHQESTEH VLSGGVVVSA VFFILSANIL 360
  361 SSPSKRGQKG TLIGYSPEGT PLYHFMGDAF QHSSQSVPRF IKDSLKQVLE ESDSRQIFYF 420
  421 LCLNLLFTFV ELFYGVLTNS LGLISDGFHM LFDCSALVMG LFAALMSRWK ATRIFSYGYG 480
  481 RIEILSGFIN GLFLIVIAFF VFMESVARLI DPPELDTNML TPVSVGGLIV NLIGICAFSH 540
  541 AHSHGHGASQ GNCHSDHGHS HHAHGHGHDH GHSHGFTGGG MNANMRGVFL HVLADTLGSI 600
  601 GVIVSTVLIE QFGWFIADPL CSLFIAVLIF LSVIPLIKDA CQVLLLRLPP DHEKELHIAL 660
  661 EKIQKIEGLI SYRDPHFWRH SASIVAGTIH IQVTSEVLEQ RIVQQVTGIL KDAGVNNLTI 720
  721 QVEKEAYFQH MSGLSTGFHD VLAMTKQMES LKYCKDGTYI M