YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAX4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.86
Transmembrane Helix	71	90	0.71
Non-Cytoplasmic	91	128	0.56
Transmembrane Helix	129	150	0.73
Cytoplasmic	151	159	0.83
Transmembrane Helix	160	183	0.89
Non-Cytoplasmic	184	200	0.89
Transmembrane Helix	201	221	0.91
Cytoplasmic	222	231	0.92
Transmembrane Helix	232	255	0.87
Non-Cytoplasmic	256	291	0.87
Transmembrane Helix	292	311	0.93
Cytoplasmic	312	320	0.78
Transmembrane Helix	321	340	0.92
Non-Cytoplasmic	341	357	0.78
Transmembrane Helix	358	381	0.89
Cytoplasmic	382	390	0.74
Transmembrane Helix	391	410	0.94
Non-Cytoplasmic	411	416	0.80
Transmembrane Helix	417	438	0.89
Cytoplasmic	439	446	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSISTESSS NLSLLENGGG GSDKPTAETS RRVRRTVSAS SLIRKRSDLK LISRVRWEFM  60
   61 RRILTNLQEV LLGTKLFILF PAVPLAVVAH RYDCPRAWVF ALSLLGLTPL AERISFLTEQ 120
  121 IAFHTGPTVG GLMNATCGNA TEMIIAILAV GQRKMRIVKL SLLGSILSNL LFVLGTSLFL 180
  181 GGISNLRKHQ SFDPRQGDMN SMLLYLALLC QTLPMIMRFT MEAEEYDGSD VVVLSRASSF 240
  241 VMLIAYLAFL IFHLFSSHLS PPPPPLPQRE DVHDDDVSDK EEEGAVIGMW SAIFWLIIMT 300
  301 LLVALLSDYL VSTIQDAADS WGLSVGFIGI ILLPIVGNAA EHAGAVIFAF RNKLDITLGI 360
  361 ALGSATQIAL FVVPVTVLVA WTMGIEMDLN FNLLETACFA LSILVTSLVL QDGTSNYMKG 420
  421 LVLLLCYVVI AACFFVSNSP SSKLLF