YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSN8_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVSSCLKY SMFFFNFLFW VCGTLILGLA IWVRVSKDGK EIITSGDSST NPFIAVNILI  60
   61 AVGSIIMVLG FLGCCGAVKE SRCMLLLFFI GLLLILILQV AAGILGAAFK PEYNRILNET 120
  121 LYENAKLLSD NTDEAKDFQK AMIVFQSEFK CCGLENGAAD WGNNFVEAKE SCQCTGTDCA 180
  181 TYQGSSVYPK TCLSLIKDLF EKNIIIVIGI AFGLAVIEIL GLVFSMVLYC QIGSK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.85
Transmembrane Helix	12	33	0.93
Non-Cytoplasmic	34	52	0.84
Transmembrane Helix	53	75	0.93
Cytoplasmic	76	84	0.73
Transmembrane Helix	85	108	0.91
Non-Cytoplasmic	109	203	0.89
Transmembrane Helix	204	229	0.87
Cytoplasmic	230	235	0.76