YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71679889, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVTSELFTN VLIPWQRVLF TASLLTCWLL STTASVTIQS PKHVVEGENI LLQVDNLPEN  60
   61 LLAFAWYRGL INWRLTIALH FLDYSTSMTG PEHSDREILY SNGSLWIQNV TQEDTGYYIF 120
  121 QTISNHGELE SNTSTFLQVY SSHFTCGRPS FPAKLTIESV PPRVAEGGRV LLRVHNLPEY 180
  181 LQLFFWYKGV IMIHKVEIVR HRTLKNLSDP GPAHSGREIV FSNGSLLLQN VTWKDTGFYT 240
  241 LQTVNGFREM ELAHIYLQVE TPCCDPLDSA QLRIDPVTPH AAEGESVLLQ VHNLPEDLQT 300
  301 FSWYKGVDST PSFQIVEYSK AMKSIISGSA YSRREIGYTN GSLLLQDVTE KDSGLYTLVT 360
  361 IDSNMRVETV HVQVNIYKLV TQPAMRVTDS TVRVQSSVVF TCFSDNTGVS IRWLFNNQSL 420
  421 QLTERMTLSP SKCQLRIHTV RKEDAGEYQC EAFNPVSSKT SLPVSLAVMN E

Type	Start	End	Confidence
Signal Peptide	1	34	0.93
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	471	0.99