YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUP58_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.38
Transmembrane Helix	12	34	0.76
Cytoplasmic	35	41	0.32
Transmembrane Helix	42	68	0.62
Non-Cytoplasmic	69	75	0.48
Transmembrane Helix	76	100	0.74
Cytoplasmic	101	109	0.44
Transmembrane Helix	110	131	0.69
Non-Cytoplasmic	132	147	0.51
Transmembrane Helix	148	171	0.70
Cytoplasmic	172	438	0.52
Transmembrane Helix	439	453	0.25
Non-Cytoplasmic	454	471	0.58
Transmembrane Helix	472	488	0.51
Cytoplasmic	489	497	0.49
Transmembrane Helix	498	519	0.66
Non-Cytoplasmic	520	547	0.79
Transmembrane Helix	548	570	0.68
Cytoplasmic	571	587	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGFSFGSG TLGSTTVAPG GTGAGSGFSF GTVASSTPSV GLNFGSLGSS VTPASTSASA  60
   61 GGFGTGLFGS KPATGFTLGG TSAGTAATTS ASTTGFSLGF SKPAASATPF ALPVTSTSAS 120
  121 GLTLSSALTS TPAASTGFTL NNLGATPATT TTASTGLSLG GALAGLGGSL FQSGNTATSG 180
  181 LGQNALSLSL GTTAPTSAAS NEGLGGIDFS TSSDKKSDKT GTRPEDSKAL KDENLPPVIC 240
  241 QDVENLQKFV KEQKQVQEEI SRMSSKAMLK VQEDIKALKQ LLSLAASGLQ RNTLNIDKLK 300
  301 LETAQELKNA EIALRTQKTP PGLQHENTAP ADYFRILVQQ FEVQLQQYRQ QIEELENHLA 360
  361 TQASNSHITP QDLSMAMQKI YQTFVALAAQ LQSIHENVKV LKEQYLGYRK MFLGDAVDVF 420
  421 EARRTEAKKW QNAPRVTTGP TPFSTMPNAA AVAMAATLTQ QQQPATGPQP SLGVSFGTPF 480
  481 GSGIGTGLQS SGLGSSNLGG FGTSSGFGCG TTGASTFGFG TTDKPSGSLS AGFGSSSTSG 540
  541 FNFSNPGITA SAGLTFGVSN PASAGFGTGG QLLQLKRPPA GNKRGKR