YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPY6R_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLTNQPTP NKTSGKSNNS AFFYFESCQP PFLAILLLLI AYTVILIMGI FGNLSLIIII  60
   61 FKKQREAQNV TNILIANLSL SDILVCVMCI PFTVIYTLMD HWVFGNTMCK LTSYVQSVSV 120
  121 SVSIFSLVLI AIERYQLIVN PRGWKPRVAH AYWGIILIWL ISLTLSIPLF LSYHLTNEPF 180
  181 HNLSLPTDIY THQVACVEIW PSKLNQLLFS TSLFMLQYFV PLGFILICYL KIVLCLRKRT 240
  241 RQVDRRKENK SRLNENKRVN VMLISIVVTF GACWLPLNIF NVIFDWYHEM LMSCHHDLVF 300
  301 VVCHLIAMVS TCINPLFYGF LNKNFQKDLM MLIHHCWCGE PQESYENIAM STMHTDESKG 360
  361 SLKLAHIPTG I

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.97
Transmembrane Helix	32	60	0.83
Cytoplasmic	61	72	0.92
Transmembrane Helix	73	95	0.90
Non-Cytoplasmic	96	112	0.83
Transmembrane Helix	113	132	0.92
Cytoplasmic	133	150	0.86
Transmembrane Helix	151	172	0.93
Non-Cytoplasmic	173	213	0.95
Transmembrane Helix	214	235	0.91
Cytoplasmic	236	258	0.92
Transmembrane Helix	259	280	0.92
Non-Cytoplasmic	281	297	0.91
Transmembrane Helix	298	321	0.91
Cytoplasmic	322	371	0.99