YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55249858
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.62
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	141	0.98
Transmembrane Helix	142	164	0.94
Cytoplasmic	165	175	0.88
Transmembrane Helix	176	197	0.93
Non-Cytoplasmic	198	221	0.90
Transmembrane Helix	222	241	0.95
Cytoplasmic	242	389	0.99
Transmembrane Helix	390	412	0.88
Non-Cytoplasmic	413	423	0.79
Transmembrane Helix	424	443	0.92
Cytoplasmic	444	454	0.78
Transmembrane Helix	455	475	0.93
Non-Cytoplasmic	476	476	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMGLRAPHW VAVGLLTWAA LGLLVAGHEG HGDLHKDVEE DFHGHSHGHS HEDFHHGHSH  60
   61 GHSHEDFHHG HGHTHESIWH GHAHSHDHGH SREELHHGHS HGHSHDSLHH GGHGHAHREH 120
  121 SHGTSREAGA PGIKHHLDTV TLWAYALGAT VLISAAPFFV LFLIPVESNS PRHRSLLQIL 180
  181 LSFASGGLLG DAFLHLIPHA LEPHSHHAPE QPGHGHSHSG QGPILSVGLW VLSGIVAFLV 240
  241 VEKFVRHVKG GHGHSHGHGD RHAHGDSHTH GDRHECSSKE KPSTEEEKEV GGLRKRRGGN 300
  301 TGPRDGPVKP QSPEEEKAGS DLRVSGYLNL AADLAHNFTD GLAIGASFRG GRGLGILTTM 360
  361 TVLLHEVPHE VGDFAILVQS GCSKKQAMRL QLVTAIGALA GTACALLTEG GAVDSDVAGG 420
  421 AGPGWVLPFT AGGFIYVATV SVLPELLREA SPLQSLLEVL GLLGGVAMMV LIAHLE