YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTNS_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.87
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	123	0.98
Transmembrane Helix	124	143	0.85
Cytoplasmic	144	161	0.72
Transmembrane Helix	162	182	0.87
Non-Cytoplasmic	183	206	0.91
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	234	0.89
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	262	0.62
Transmembrane Helix	263	282	0.88
Cytoplasmic	283	295	0.83
Transmembrane Helix	296	318	0.89
Non-Cytoplasmic	319	335	0.90
Transmembrane Helix	336	356	0.93
Cytoplasmic	357	367	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNWLLILT LFLLMFIEKY ESTVSLTAPP TVKLENGSST NVDITLGHPL NSTLVITFEV  60
   61 TFRSKNLTIV ELPDEVIVPR GEKNASFQVT SQNIGQVTVF LHGNHSNQTC PRIRFLVIHS 120
  121 RIVSIINQVI GWIYFMAWSV SFYPQVIQNW RRKSVIGLSF DFLALNLTGF VAYSVFNIGL 180
  181 LWVPYIQEEF LLKYPNGVNP VDSNDAFFSL HAVALTLIVI LQCCLYERGN QRVSWPSIGF 240
  241 LVLAWLFVLV TMIVAAVGIT TWLQFLFCFS YIKLIITLIK YFPQAYMNFY YKSTKGWSIG 300
  301 GVLLDFTGGS FSLLQMFLQS YNNDQWTLIF GDPTKFGLGV FTIFFDVVFF IQHFYLYRKK 360
  361 PGYDQLN