YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHA6_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSRDQGNL HSGLCLWLCG FLALFKGSTG CESEEQLFHR LFAHYNRFIR PVENVSDPVT  60
   61 VHFELAITQL ANVDEVNQIM ETNLWLRHIW KDYRLRWDPT EYDGIETLRV PADNIWKPDI 120
  121 VLYNNAVGDF QVEGKTKALL KYDGVITWTP PAIFKSSCPM DITFFPFDHQ NCSLKFGSWT 180
  181 YDKAEIDLLI IGSKVDMNDF WENSEWEIVD ASGYKHDIKY NCCEEIYTDI TYSFYIRRLP 240
  241 MFYTINLIIP CLFISFLTVL VFYLPSDCGE KVTLCISVLL SLTVFLLVIT ETIPSTSLVI 300
  301 PLVGEYLLFT MIFVTLSIVV TVFVLNIHYR TPATHTMPKW VKTIFLQAFP SILMMRKPLD 360
  361 KTKEAGGVKD PKSHTKRPAK VKFTHRGESK LLKECHHCQK SSDIAPGKRR SSQQPARWVA 420
  421 ENSEHSSDVE DVIESVQFIA ENMKSHNETN EVEDDWKYMA MVVDRVFLWV FIIVCVFGTV 480
  481 GLFLQPLLGN TGKS

Type	Start	End	Confidence
Signal Peptide	1	33	0.90
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	241	0.99
Transmembrane Helix	242	264	0.94
Cytoplasmic	265	271	0.92
Transmembrane Helix	272	293	0.90
Non-Cytoplasmic	294	305	0.82
Transmembrane Helix	306	329	0.90
Cytoplasmic	330	465	0.99
Transmembrane Helix	466	488	0.92
Non-Cytoplasmic	489	494	0.95