YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DEGS2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSAARSDF EWVYSDQPHT QRRKEMLAKY PAIKALMRPD PHIKWTVSGM VLVQVLACWL  60
   61 VRGLSWRWLL FWAYAFGGCI NHSLTLAIHD ISHNTAFGTS CVSRNRWFAI FANLPIGLPY 120
  121 ATSFKKYHVD HHRYLGGDGL DVDIPTNFEG WFFCTPARKL LWLVLQPFFY SLRPLCVNPK 180
  181 VVTRMEILNA LVQLAFDVTI FALWGIKPIV YLLGSSLLGL GLHPISGHFV AEHYMFLKGH 240
  241 ETYSYYGPLN WITFNVGYHM EHHDFPSIPG YYLPLVRKIA PEYYDHLPQH HSWVKVLWDF 300
  301 VFEDSMGPYS RVKRKCKLAK DHL

Type	Start	End	Confidence
Cytoplasmic	1	42	0.87
Transmembrane Helix	43	63	0.85
Non-Cytoplasmic	64	69	0.62
Transmembrane Helix	70	89	0.84
Cytoplasmic	90	106	0.63
Transmembrane Helix	107	124	0.59
Non-Cytoplasmic	125	157	0.54
Transmembrane Helix	158	172	0.30
Cytoplasmic	173	186	0.57
Transmembrane Helix	187	206	0.52
Non-Cytoplasmic	207	208	0.47
Transmembrane Helix	209	230	0.67
Cytoplasmic	231	323	0.66