YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21699044, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLNNILNF QTGLGAIANI FLLFFYTMII LCHRSKPMDM ISFQLTFIHI MMFLTGGHAW  60
   61 LKDFLGSLNI GNDFICKATA YINRVMRGLS ICITCLLSVF QAVTISPNTS LLAKFKHKLK 120
  121 KYMIYSFFYF WSFNLSFSIN RIIYTGAYTN VSETNQLKVT KSCSLFPMNY IIRGLILTMT 180
  181 TLRDVFLVGV MLTMSTYMVI ILFRHQRQCK HLHSINHLRA SPEKRATQTI LLLVVFFVVM 240
  241 YWVDFIISSS SVLLWMYDSV ILTVQKFVMN VYPTITPLVQ ISSDKRIIII LKSMQKLWHQ 300
  301 IF

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.81
Transmembrane Helix	12	32	0.91
Cytoplasmic	33	40	0.87
Transmembrane Helix	41	61	0.93
Non-Cytoplasmic	62	87	0.89
Transmembrane Helix	88	106	0.91
Cytoplasmic	107	123	0.78
Transmembrane Helix	124	144	0.91
Non-Cytoplasmic	145	184	0.92
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.91
Non-Cytoplasmic	247	302	0.67