YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558577, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLNNILYF QAGLGAIANI VLLFFYTIII LCHRSKPMDM ISCQLTFIHI MLFLTGGHAW  60
   61 LTDFFVSLNI GNDFICKATA YINRVMRGLS ICITCLLSVF QAVTISPNTS LLAKFKHKLK 120
  121 KYMISSFFYF WSFNLSFSIN RIIYTGAYTN VSETSQLKVI KYCSLFPMNY IIRGLILTMT 180
  181 TLRDVFLVGV MLTTSTYMVI ILFRHQRQCK HLHSINHLRA SPEKRATHTI LLLVVFFVVM 240
  241 YWVDFIISST SVLLWMYDPV ILTVQKFVMN AYPTITPLVQ ISSDKRISMM LKNMQK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	40	0.83
Transmembrane Helix	41	62	0.89
Non-Cytoplasmic	63	87	0.87
Transmembrane Helix	88	106	0.92
Cytoplasmic	107	124	0.78
Transmembrane Helix	125	144	0.90
Non-Cytoplasmic	145	184	0.90
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.92
Non-Cytoplasmic	247	261	0.82
Transmembrane Helix	262	282	0.52
Cytoplasmic	283	296	0.56