YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148666376, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLNNIFYF QAGLGTLANI FLLIFYTIII LCHRSKPMDL ISCQLTFIHI IMVITGWDIF  60
   61 TTEMFDLLNI ENDIICKATS YLNRAMRGLS ISITCLLSVF QAVTISPNSA LLAKFKHKLK 120
  121 KYMIYSFFYF WSFNLSFSIN RIFYTGAYIN VSETNQVKVT KYCSLFPMNN IIRGLISTII 180
  181 TLRDVFFVGV MLSTSTYMVI ILFRHQRQCK HLHSDSHLRA SPEKRATQTI LLLVFFYVVM 240
  241 YWVDFIMSSR TVFLWMYDPV MLTVQKFVLN AYPTITPLIQ ISSDNRILMI LKSMQKIWHQ 300
  301 IF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	39	0.84
Transmembrane Helix	40	60	0.92
Non-Cytoplasmic	61	88	0.92
Transmembrane Helix	89	111	0.87
Cytoplasmic	112	121	0.91
Transmembrane Helix	122	144	0.86
Non-Cytoplasmic	145	184	0.90
Transmembrane Helix	185	205	0.90
Cytoplasmic	206	225	0.97
Transmembrane Helix	226	246	0.91
Non-Cytoplasmic	247	268	0.82
Transmembrane Helix	269	288	0.51
Cytoplasmic	289	302	0.60