YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558581, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLNNVFYV QAGLGTLANI FLLFFYTIII LCHRSKPMDL ISCQLTFVHI IMVITGWDIF  60
   61 TTDMFDLLNI ENDFICKATS YLNRVMRGIS ICITCLLSVF QAVTISPNTS LLAKFKYKFK 120
  121 KYMISSFFYF WSFNLSFSIN RIFYTGAYTN VSETNQLKVT KYCSLFPMDY IIKGLISTMT 180
  181 ALRDVFLVGV MLTTSAYMII ILFRHQRQCM HLHSDSHLRA SPEKRATHII LLLVFFYVVM 240
  241 YWIDFIMSSR TVLLWMYDPV LLTVQKFVIN AYPTITPLIQ ISSDNRINIM IKNMQKVCHQ 300
  301 IFFKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	30	0.91
Cytoplasmic	31	39	0.83
Transmembrane Helix	40	60	0.91
Non-Cytoplasmic	61	87	0.90
Transmembrane Helix	88	106	0.93
Cytoplasmic	107	124	0.77
Transmembrane Helix	125	144	0.90
Non-Cytoplasmic	145	184	0.92
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	305	0.73