YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717671, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAFKNVLYF QAGLGVLANM FLLCFYIFIL IGHRPKPTDL ISCQLTFIHM MMFLTGGDLL  60
   61 LTDIFSSLNI DNDFKCKTTF YISRVTRGLS ICTTCLLSVF QAVTISPKTS VLANFKQKLK 120
  121 KYMTYVFLCI WSFNLSYSSN RIFYVHGFTN VSETNQMQVT ESCSLFRMNY IIRVFIFTVT 180
  181 TSRDVFLVGV MLITSTYMVI ILCRNQRQCK HLHSINHLRA SPEKRATQAI LLLVIFFVVM 240
  241 YWVDFIISST SVLLWMYDPI ILQVQKFVMY AFPTITPLVQ ISSDNRIIVM LKNMHSKHHQ 300
  301 RFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.81
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.73
Transmembrane Helix	40	62	0.80
Non-Cytoplasmic	63	84	0.74
Transmembrane Helix	85	105	0.77
Cytoplasmic	106	121	0.79
Transmembrane Helix	122	143	0.80
Non-Cytoplasmic	144	184	0.93
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	247	0.90
Non-Cytoplasmic	248	266	0.84
Transmembrane Helix	267	288	0.69
Cytoplasmic	289	303	0.76