YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148672805, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKNILYF QAGLGVLANM FLLTFYIFTI PCHSPKPVDL ISCQLTFIHI IMVLTGWDIW  60
   61 LTDMFELLNI ENDFKCKATF YINRVMRGLS ICITCPLSVF QAVTISPSTS LLAKFKHKLK 120
  121 KYIIYAFFYV WSFNLSFSSN QFFSVGAYAN LSETSQMKVT NYCSHFPMNN IIRGLILTVT 180
  181 TLRDVFLVGV MLTTSSYMVV FLCRHQRQCQ HLHSIRHLRA SPEKKATQII LLLVVFFVVM 240
  241 YWVDFFISST SILLWRYDPV ILTVQKFVMN AYPTITPLVQ ITSDERIINV LKNLWP

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.68
Transmembrane Helix	7	30	0.91
Cytoplasmic	31	39	0.61
Transmembrane Helix	40	61	0.87
Non-Cytoplasmic	62	87	0.68
Transmembrane Helix	88	105	0.70
Cytoplasmic	106	121	0.73
Transmembrane Helix	122	143	0.84
Non-Cytoplasmic	144	184	0.89
Transmembrane Helix	185	205	0.91
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	296	0.93