YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148672803, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKNVLYF QSGLGVLANM FLLFFYIFII LGHRPKPMDL ILCQFSFVHI LMFLTAGDIW  60
   61 LSDLFESLNI ENDFICKATF YTGRVMRGLS MCITCLLGVF QAVTISPSTS LLAKFKHKLK 120
  121 KYIIYAVFYI WFLNFSINSH MIVYVGGFNN RSETNQMRIT KTCSHFPMNN IIKELILTVI 180
  181 TLKDVFLVGV MLTTSIYMVI ILYRHQRKCK HLHSIRHLRT SPEKKATQTI LLLLVFFVVM 240
  241 YWVDLIISST SVLLWRYDPI ILTVQKFVVN VYPTITPLVQ ISSDKRIINV LKNLWLKCHQ 300
  301 TV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.91
Cytoplasmic	31	39	0.83
Transmembrane Helix	40	61	0.90
Non-Cytoplasmic	62	87	0.90
Transmembrane Helix	88	111	0.82
Cytoplasmic	112	121	0.91
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	184	0.94
Transmembrane Helix	185	205	0.94
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	302	0.89