YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558603, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKNVLFI QSGLGVLANM FLLIFYILII LGHRPKPMDL ISCQLSFVHI MMLLTAGDNW  60
   61 FTDLFESLNI KNDFICKAAF YTSRVMRGLS MGITCLLSVF QAVTISPSTS LLTKFKHKLK 120
  121 NYIIYAVFYI CFFNFSINSH MIVYVGGFNN VSKTNQMRIT KTCSHFPMNN IIKELILTVI 180
  181 TLKDVFLVGV MLTTSIYMVI ILYRHQRKCK HLHSIRHLRA SPEKKATQTI LLLVVFFVVM 240
  241 YWVDLIISST SVLLWMYDPV ILTVQKFVVN AYPTITPLVQ ISSDKRIINV LKNLWLKCHQ 300
  301 TV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.71
Transmembrane Helix	40	57	0.82
Non-Cytoplasmic	58	88	0.86
Transmembrane Helix	89	111	0.85
Cytoplasmic	112	121	0.87
Transmembrane Helix	122	142	0.93
Non-Cytoplasmic	143	184	0.93
Transmembrane Helix	185	205	0.94
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	302	0.83