YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558605, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLENVFYI QAGLGVLANM FLLFFYTSII LGDRSKPMDL ISCQLTFIHI MMILSEGDNL  60
   61 LANILESLKF GNDVKCKTTF YINRVMRGLS ICITCLLSVF QAVTISPSTS LLAKFKNKVK 120
  121 THIISAFFYF WSFNLSFSSR LIFYVAGFTN VSETYQMKVT KSCSLYPMNY IIRGSILTVI 180
  181 IARDVFLVGV MLTTSTYMVI TLCRHQMQCK HLHNISYLRA SPEKRATQTI LLLVVFFVVM 240
  241 YWLDFIISFT STLSWKYVPV VLTVQKLVMY AYPTLTPLVQ ITSDKRIISI LKNMHSKFHQ 300
  301 IF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.74
Transmembrane Helix	7	30	0.90
Cytoplasmic	31	39	0.64
Transmembrane Helix	40	55	0.60
Non-Cytoplasmic	56	87	0.72
Transmembrane Helix	88	109	0.81
Cytoplasmic	110	125	0.71
Transmembrane Helix	126	147	0.86
Non-Cytoplasmic	148	179	0.85
Transmembrane Helix	180	203	0.81
Cytoplasmic	204	225	0.92
Transmembrane Helix	226	247	0.88
Non-Cytoplasmic	248	302	0.68