YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124297338, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLENVFYI QAGLGILANL FLLFFYTSKI LVDRPKPMDL ISSQLTFIHI MMILSEGDNL  60
   61 LANILESLKL GNDIKCKTTF YINRVMRGLS VCITCLLSVF QAVTISPSTS FLAQFKNKVK 120
  121 THIIYAFFYF WSFNLSFSSR LIFYVAGFTN VSGTHQMKVT KSCSLFPMNY IIRGLILTVA 180
  181 ISRDVFLVGL MLTTSTYMVI ILCRHQRQCK HLHSNSHIRA SPEERATQTI LLLVVFFVVM 240
  241 YWLDFIISFT STLSWMYVPV VLTVQKLVMY AYPTISPLVQ ITSDKRIISI LKNVHSKFH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.74
Transmembrane Helix	7	28	0.91
Cytoplasmic	29	84	0.55
Transmembrane Helix	85	105	0.80
Non-Cytoplasmic	106	122	0.46
Transmembrane Helix	123	148	0.78
Cytoplasmic	149	161	0.41
Transmembrane Helix	162	181	0.50
Non-Cytoplasmic	182	184	0.64
Transmembrane Helix	185	205	0.85
Cytoplasmic	206	225	0.92
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	299	0.51