YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717685, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFENVLYI QAGLGLLPNM FLLFFYTFII LGHRSKPMDL ISCQLTFIHI MMILSEGDNL  60
   61 LANILESLKF GNGIKCKTTF YINRVMRGLS ICITCLLSVS QAITISPSTS LLAKFKSKVK 120
  121 KHIIYAFFYL WSFNLSFSSR WIFYVAGFTN VSENRQMKVT KSCSLFPMNY IIRGLFLTVT 180
  181 MSRDICLVGV MLITSTYMVI ILCRHQRQCK HLHSISYLRA SPEKRATQNI LLLVVFFVVM 240
  241 YWVDFIISFT STLFWMYDPV ILTVQQFVMY AYPTIAPLVQ ISSDKRIIHI LIHILKKFTP 300
  301 SASRFSKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.76
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	39	0.68
Transmembrane Helix	40	57	0.58
Non-Cytoplasmic	58	87	0.65
Transmembrane Helix	88	105	0.79
Cytoplasmic	106	122	0.70
Transmembrane Helix	123	144	0.90
Non-Cytoplasmic	145	184	0.84
Transmembrane Helix	185	205	0.89
Cytoplasmic	206	225	0.97
Transmembrane Helix	226	248	0.86
Non-Cytoplasmic	249	261	0.74
Transmembrane Helix	262	281	0.65
Cytoplasmic	282	308	0.71