YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717695, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNTVLYF QAGFGVLVNM FLLFFYTFII LCHRPKPMDL FSCQLTFIHI MMILTGGDTL  60
   61 LADILESLKF GNDIKCKTVF YINRVMRGLS ICITCLLSVF QAVTISPNTF LFAKFKQKLK 120
  121 KYMMYAFFYL WSFNVLFSSR WFFYVAGFTN MSETHQMKVS KSCFLYPVNH IIRGLMLTVA 180
  181 MSRDVFLVGV MMTTSTYMVI ILFRHQRQCK HLHSISNLRG SPEKRATQII LLLVVFFVVM 240
  241 YWVDFIISFT SILLWAYDPV VLTVQMFVMN IYPTITPVVQ ISSDKRIINV LKNLRSE

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.91
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	39	0.82
Transmembrane Helix	40	62	0.85
Non-Cytoplasmic	63	88	0.89
Transmembrane Helix	89	112	0.86
Cytoplasmic	113	124	0.84
Transmembrane Helix	125	144	0.94
Non-Cytoplasmic	145	184	0.92
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	260	0.65
Transmembrane Helix	261	279	0.74
Cytoplasmic	280	297	0.76