YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717703, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFGNLAMGI VLSLQSALGI LGNFSLLFYY LVLYNKERTL KIIDIILIHV FTSNSLIIFS  60
   61 KGLPEVLAVF GWNDLFDDVG CKLIMYVRRV SRSMSISMTC LLSVFQAITI STRNSCWKEF 120
  121 KEQTAKFMGL FISLCWILFM LVNMLFPVYT STNRNSKNKT QKKDIEFCHS VGRDKMVDIM 180
  181 YTAFCVFPEV LFSLLIVSSS TTMIVILYGH KKRVQHILHT HASPRTSAEN RATQTILILV 240
  241 CTFLAFYTLS SVLQGYVALS HDPSWWVMNI TTIISMGFPA IGPFVMSRDF TVSRFCFTCI 300
  301 GNLKLP

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.79
Transmembrane Helix	12	33	0.92
Cytoplasmic	34	44	0.78
Transmembrane Helix	45	63	0.91
Non-Cytoplasmic	64	92	0.88
Transmembrane Helix	93	112	0.89
Cytoplasmic	113	126	0.80
Transmembrane Helix	127	146	0.94
Non-Cytoplasmic	147	189	0.91
Transmembrane Helix	190	209	0.95
Cytoplasmic	210	231	0.94
Transmembrane Helix	232	253	0.87
Non-Cytoplasmic	254	264	0.76
Transmembrane Helix	265	286	0.92
Cytoplasmic	287	306	0.95